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Publications

Trainee: Current
Faculty Member: Cecilia Lo, PhD
Publications:

Gabriel GC, Pazour GJ, Lo CW. Congenital Heart Defects and Ciliopathies Associated With Renal Phenotypes. Front Pediatr. 2018 Jun 15;6:175. doi: 10.3389/fped.2018.00175. eCollection 2018.

Gabriel GC, Young CB, Lo CW. Role of cilia in the pathogenesis of congenital heart disease. Semin Cell Dev Biol. 2020 May 14:S1084-9521(19)30166-1. doi: 10.1016/j.semcdb.2020.04.017. Online ahead of print.

Gabriel GC, Lo   CW. Left-right patterning in congenital heart disease beyond heterotaxy. Am J Med Genet C Semin Med Genet. 2020 Mar;184(1):90-96. doi: 10.1002/ajmg.c.31768. Epub 2020 Jan 30.

Trainee Name: Geyon Garcia
Trainee: Current
Faculty Member: Lan Coffman, MD, PhD
Publications:

Frisbie L, Pressimone C, Dyer E, Baruwal R, Garcia G, St Croix C, Watkins S, Calderone M, Gorecki G, Javed Z, Atiya HI, Hempel N, Pearson A, Coffman LG. Carcinoma-associated mesenchymal stem cells promote ovarian cancer heterogeneity and metastasis through mitochondrial transfer. Cell Rep. 2024 Aug 27;43(8):114551. doi: 10.1016/j.celrep.2024.114551. Epub 2024 Jul 26. PMID: 39067022; PMCID: PMC11420855.

Garcia GL, Orellana T, Gorecki G, Frisbie LG, Baruwal R, Goldfield E, Beddows I, MacFawn IP, Britt AK, Hale MM, Shen H, Buckanovich R, Finkel T, Drapkin R, Soong TR, Bruno TC, Atiya HI, Coffman L. Stromal mediated DNA damage promotes high grade serous ovarian cancer initiation. bioRxiv [Preprint]. 2024 May 28:2024.05.23.595550. doi: 10.1101/2024.05.23.595550. PMID: 38853994; PMCID: PMC11160569.

Atiya HI, Gorecki G, Garcia GL, Frisbie LG, Baruwal R, Coffman L. Stromal-Modulated Epithelial-to-Mesenchymal Transition in Cancer Cells. Biomolecules. 2023 Nov 1;13(11):1604. doi: 10.3390/biom13111604. PMID: 38002286; PMCID: PMC10669774.
 
Trainee Name: Joshua Garfein
Trainee: Current
Faculty Member: Jared Magnani, MD, MSc
Publications:

Garfein J, Sekikawa A, Mrkva A, Dalmacy D, Berry JD, Tiruneh YM, Magnani JW. Educational Attainment and the Effect of Intensive Blood Pressure Reduction: A Post Hoc Analysis of the SPRINT Study. J Am Heart Assoc. 2025 May 21:e037712. doi: 10.1161/JAHA.124.037712. Epub ahead of print. PMID: 40396422.

Irani S, Brandt EJ, Pai CW, Garfein J, Kline-Rogers E, Rubenfire M. Educational Attainment and Cardiovascular Risk Among Patients in Cardiac Rehabilitation. Am J Cardiol. 2023 Nov 15;207:465-469. doi: 10.1016/j.amjcard.2023.08.105. Epub 2023 Oct 7. PMID: 37804557.

Garfein J, Chen Y, Swabe G, Guhl E, Forman DE, Magnani JW. Race or ethnicity and education in cardiac rehabilitation enrollment. J Cardiol. 2024 Apr;83(4):280-283. doi: 10.1016/j.jjcc.2023.08.002. Epub 2023 Aug 8. PMID: 37562543; PMCID: PMC10850430.

Sekikawa A, Wharton W, Butts B, Veliky CV, Garfein J, Li J, Goon S, Fort A, Li M, Hughes TM. Potential Protective Mechanisms of S-equol, a Metabolite of Soy Isoflavone by the Gut Microbiome, on Cognitive Decline and Dementia. Int J Mol Sci. 2022 Oct 7;23(19):11921. doi: 10.3390/ijms231911921. PMID: 36233223; PMCID: PMC9570153.

Garfein J, Guhl EN, Swabe G, Sekikawa A, Barinas-Mitchell E, Forman DE, Magnani JW. Racial and Ethnic Differences in Cardiac Rehabilitation Participation: Effect Modification by Household Income. J Am Heart Assoc. 2022 Jul 5;11(13):e025591. doi: 10.1161/JAHA.122.025591. Epub 2022 Jun 22. PMID: 35730601; PMCID: PMC9333381.

Trainee: Current
Faculty Member: Toren Finkel, MD, PhD
Publications:

Ghosh-Choudhary S, Finkel T. Lactylation regulates cardiac function. Cell Res. 2023 Sep;33(9):653-654. doi: 10.1038/s41422-023-00857-5. PMID: 37488305; PMCID: PMC10474038.

Moturi S, Ghosh-Choudhary SK, Finkel T. Cardiovascular disease and the biology of aging. J Mol Cell Cardiol. 2022 Jun;167:109-117. doi: 10.1016/j.yjmcc.2022.04.005. Epub 2022 Apr 11. PMID: 35421400.

Ghosh-Choudhary S, Carleton N, Nouraie SM, Kliment CR, Steinman RA. Predoctoral MD-PhD grants as indicators of future NIH funding success. JCI Insight. 2022 Mar 22;7(6):e155688. doi: 10.1172/jci.insight.155688. PMID: 35315356; PMCID: PMC8986062.

Ghosh-Choudhary SK, Liu J, Finkel T. The role of mitochondria in cellular senescence. FASEB J. 2021 Dec;35(12):e21991. doi: 10.1096/fj.202101462R. PMID: 34758157; PMCID: PMC8720272.

Ghosh-Choudhary S, Carleton N, Flynn JL, Kliment CR. Strategies for Achieving Gender Equity and Work-Life Integration in Physician-Scientist Training. Acad Med. 2022 Apr 1;97(4):492-496. doi: 10.1097/ACM.0000000000004246. PMID: 34292189; PMCID: PMC8770678.

Ghosh-Choudhary S, Chan SY. Evolving Schema for Employing Network Biology Approaches to Understand Pulmonary Hypertension. Adv Exp Med Biol. 2021;1303:57-69. doi: 10.1007/978-3-030-63046-1_4. PMID: 33788187.

Ghosh-Choudhary S, Liu J, Finkel T. Metabolic Regulation of Cell Fate and Function. Trends Cell Biol. 2020 Mar;30(3):201-212. doi: 10.1016/j.tcb.2019.12.005. Epub 2020 Jan 23. PMID: 31983571; PMCID: PMC7043867.
Trainee Name: Jacob Gillis
Trainee: Current
Faculty Member: Dan Kaplan, MD, PhD
Publications:

Liu AW, Zhang YR, Chen CS, Edwards TN, Ozyaman S, Ramcke T, McKendrick LM, Weiss ES, Gillis JE, Laughlin CR, Randhawa SK, Phelps CM, Kurihara K, Kang HM, Nguyen SN, Kim J, Sheahan TD, Ross SE, Meisel M, Sumpter TL, Kaplan DH. Scratching promotes allergic inflammation and host defense via neurogenic mast cell activation. Science. 2025 Jan 31;387(6733):eadn9390. doi: 10.1126/science.adn9390. Epub 2025 Jan 31. PMID: 39883751.

Deng L, Gillis JE, Chiu IM, Kaplan DH. Sensory neurons: An integrated component of innate immunity. Immunity. 2024 Apr 9;57(4):815-831. doi: 10.1016/j.immuni.2024.03.008. PMID: 38599172; PMCID: PMC11555576.

Liu AW, Gillis JE, Sumpter TL, Kaplan DH. Neuroimmune interactions in atopic and allergic contact dermatitis. J Allergy Clin Immunol. 2023 May;151(5):1169-1177. doi: 10.1016/j.jaci.2023.03.013. PMID: 37149370; PMCID: PMC10167546

Trainee Name: Gabrielle Gilmer, PhD
Trainee: Current
Faculty Member: Fabrisia Ambrosio, PhD, MPT
Publications:

Gilmer G, Iijima H, Hettinger ZR, Jackson N, Bergmann J, Bean AC, Shahshahan N, Creed E, Kopchak R, Wang K, Houston H, Franks JM, Calderon MJ, St Croix C, Thurston RC, Evans CH, Ambrosio F. Menopause-induced 17β-estradiol and progesterone loss increases senescence markers, matrix disassembly and degeneration in mouse cartilage. Nat Aging. 2025 Jan;5(1):65-86. doi: 10.1038/s43587-024-00773-2. Epub 2025 Jan 16. PMID: 39820791.

Khay AM, Gilmer G, Iijima H. Timely interventions: aerobic exercise and microvascular health post-menopause. J Physiol. 2024 Oct;602(20):5141-5142. doi: 10.1113/JP287073. Epub 2024 Aug 30. PMID: 39213462; PMCID: PMC11493500.

Gilmer G, Cluts L, Gibbons JL, Fowler J. A Randomized-Controlled Trial Evaluating the Impact of a Web Tutorial on Perceptions and Usage of Opioids Post-Carpal Tunnel Release Surgery. J Hand Surg Glob Online. 2024 Apr 12;6(4):514-518. doi: 10.1016/j.jhsg.2024.03.010. PMID: 39166193; PMCID: PMC11331156.

Zogg CK, Runquist EB 3rd, Amick M, Gilmer G, Milroy JJ, Wyrick DL, Grimm K, Tuakli-Wosornu YA. Experiences of Interpersonal Violence in Sport and Perceived Coaching Style Among College Athletes. JAMA Netw Open. 2024 Jan 2;7(1):e2350248. doi: 10.1001/jamanetworkopen.2023.50248. PMID: 38227316; PMCID: PMC10792469.

Gilmer G, Hettinger ZR, Tuakli-Wosornu Y, Skidmore E, Silver JK, Thurston RC, Lowe DA, Ambrosio F. Publisher Correction: Female aging: when translational models don't translate. Nat Aging. 2024 Jan;4(1):164. doi: 10.1038/s43587-023-00561-4. Erratum for: Nat Aging. 2023 Dec;3(12):1500-1508. doi: 10.1038/s43587-023-00509-8. PMID: 38177332.

Hettinger ZR, Hu S, Mamiya H, Sahu A, Iijima H, Wang K, Gilmer G, Miller A, Nasello G, Dâ Amore A, Vorp DA, Rando TA, Xing J, Ambrosio F. Dynamical modeling reveals RNA decay mediates the effect of matrix stiffness on aged muscle stem cell fate. bioRxiv [Preprint]. 2023 Mar 2:2023.02.24.529950. doi: 10.1101/2023.02.24.529950. PMID: 36865124; PMCID: PMC9980169.

Iijima H, Gilmer G, Wang K, Bean AC, He Y, Lin H, Tang WY, Lamont D, Tai C, Ito A, Jones JJ, Evans C, Ambrosio F. Age-related matrix stiffening epigenetically regulates α-Klotho expression and compromises chondrocyte integrity. Nat Commun. 2023 Jan 10;14(1):18. doi: 10.1038/s41467-022-35359-2. PMID: 36627269; PMCID: PMC9832042.

 
Trainee Name: Jasmine Hect
Trainee: Current
Faculty Member: Taylor Abel, MD
Publications:

Speakes ME, Reznik-Schaefer K, Al-Ramadhani R, Fernandez LD, Hect JL, Abel TJ, Welch WP. Treatment of pediatric drug-resistant generalized epilepsy with responsive neurostimulation of the centromedian nucleus of the thalamus: A case series of seven patients. Epilepsy Res. 2025 Jan 22;210:107516. doi: 10.1016/j.eplepsyres.2025.107516. Epub ahead of print. PMID: 39864118.

Gaba F, Hect JL, Abel TJ. Applications of magnetic resonance-guided laser interstitial thermal therapy in disconnective epilepsy surgery. Front Neurol. 2024 Dec 2;15:1484263. doi: 10.3389/fneur.2024.1484263. PMID: 39687405; PMCID: PMC11648569.

Rupp KM, Hect JL, Harford EE, Holt LL, Ghuman AS, Abel TJ. A hierarchy of processing complexity and timescales for natural sounds in human auditory cortex. bioRxiv [Preprint]. 2024 May 26:2024.05.24.595822. doi: 10.1101/2024.05.24.595822. PMID: 38826304; PMCID: PMC11142240.

Ikegaya N, Aung T, Mallela A, Hect JL, Damiani A, Gonzalez-Martinez JA. Thalamic stereoelectroencephalography for neuromodulation target selection: Proof of concept and review of literature of pulvinar direct electrical stimulation. Epilepsia. 2024 Jun;65(6):e79-e86. doi: 10.1111/epi.17986. Epub 2024 Apr 16. PMID: 38625609.

Viswanathan V, Rupp KM, Hect JL, Harford EE, Holt LL, Abel TJ. Intracranial Mapping of Response Latencies and Task Effects for Spoken Syllable Processing in the Human Brain. bioRxiv [Preprint]. 2024 Apr 5:2024.04.05.588349. doi: 10.1101/2024.04.05.588349. PMID: 38617227; PMCID: PMC11014624.

Hect JL, Mallela AN, Pupi M, Anthony A, Fogg D, Ho J, Slingerland AL, Ikegaya N, Abou-Al-Shaar H, Aung T, Gonzalez-Martinez J. Safety of Concomitant Cortical and Thalamic Stereoencephalography Explorations in Patients With Drug-Resistant Epilepsies. Neurosurgery. 2024 Sep 1;95(3):634-640. doi: 10.1227/neu.0000000000002919. Epub 2024 Mar 22. PMID: 38517164.

Hect JL, Harford E, Maroufi SF, Klem ML, Mansouri A, Abel TJ. Clinical outcomes of MR-guided laser interstitial thermal therapy corpus callosum ablation in drug-resistant epilepsy: a systematic review and meta-analysis. J Neurosurg Pediatr. 2023 Oct 13;33(1):12-21. doi: 10.3171/2023.9.PEDS23326. PMID: 37856385.

Gatesman TA, Hect JL, Phillips HW, Johnson BJ, Wald AI, McClung C, Nikiforova MN, Skaugen JM, Pollack IF, Abel TJ, Agnihotri S. Characterization of low-grade epilepsy-associated tumor from implanted stereoelectroencephalography electrodes. Epilepsia Open. 2024 Feb;9(1):409-416. doi: 10.1002/epi4.12840. Epub 2023 Nov 8. PMID: 37798921; PMCID: PMC10839351.

Phillips HW, Hect JL, Harford E, Pan E, Abel TJ. Comparison of magnetic resonance-guided laser interstitial thermal therapy corpus callosum ablation to open microsurgical corpus callosotomy: A single-center retrospective cohort study. Epilepsia Open. 2024 Feb;9(1):96-105. doi: 10.1002/epi4.12835. Epub 2023 Nov 10. PMID: 37766507; PMCID: PMC10839368.

Hect JL, Sefcik RK, Nowicki KW, Katz J, Greene S. Serial Neuroendoscopic Lavage for the Treatment of Elevated Cerebrospinal Fluid Protein Levels in Infants with Gram-Negative Rod Ventriculitis. Pediatr Neurosurg. 2023;58(6):401-409. doi: 10.1159/000534083. Epub 2023 Sep 13. PMID: 37703859.

Hect JL, McDowell MM, Fields D, Greene S. Relationship of cervical soft tissue injury and surgical predication following pediatric cervical spinal trauma and its sequelae on long-term neurologic outcome. World Neurosurg X. 2023 Jun 23;20:100235. doi: 10.1016/j.wnsx.2023.100235. PMID: 37456687; PMCID: PMC10339037.

Hect JL, Almast A, Simon D, Shoemaker S, McDowell MM. Prevalence, severity, and neurosurgical management of abusive head trauma during the COVID-19 pandemic. J Neurosurg Pediatr. 2023 Mar 31;32(1):19-25. doi: 10.3171/2023.2.PEDS2317. PMID: 37021756.

Andrews EG, Hect JL, Mittal AM, Nowicki KW, Agarwal V, Gerszten PC. Tetra-compartmental spinal infection with conus medullaris syndrome: illustrative case. J Neurosurg Case Lessons. 2023 Feb 6;5(6):CASE22447. doi: 10.3171/CASE22447. PMID: 36748756; PMCID: PMC10550562.

Greene S, Hect JL, Weaver K, McDowell MM. Letter to the Editor regarding the Article "Comparison of Follow-Up Length-Matched Single-Center Myelomeningocele Postnatal Closure Cohort to the Management of Myelomeningocele Study (MOMS) Trial Results". Pediatr Neurosurg. 2023;58(1):61-64. doi: 10.1159/000529013. Epub 2023 Jan 10. PMID: 36626880; PMCID: PMC10064390.

Abel TJ, Muthiah N, Hect JL, Gonzalez-Martinez J, Salehi A, Smyth MD, Smith KJ. Cost-effectiveness of invasive monitoring strategies in epilepsy surgery. J Neurosurg. 2022 Dec 30;139(1):222-228. doi: 10.3171/2022.11.JNS221744. PMID: 36585866.

Rhone AE, Rupp K, Hect JL, Harford E, Tranel D, Howard MA 3rd, Abel TJ. Electrocorticography reveals the dynamics of famous voice responses in human fusiform gyrus. J Neurophysiol. 2023 Feb 1;129(2):342-346. doi: 10.1152/jn.00459.2022. Epub 2022 Dec 28. PMID: 36576268; PMCID: PMC9886354.

Curtis K, Hect JL, Harford E, Welch WP, Abel TJ. Responsive neurostimulation for pediatric patients with drug-resistant epilepsy: a case series and review of the literature. Neurosurg Focus. 2022 Oct;53(4):E10. doi: 10.3171/2022.7.FOCUS22331. PMID: 36183183.

Rupp K, Hect JL, Remick M, Ghuman A, Chandrasekaran B, Holt LL, Abel TJ. Neural responses in human superior temporal cortex support coding of voice representations. PLoS Biol. 2022 Jul 28;20(7):e3001675. doi: 10.1371/journal.pbio.3001675. PMID: 35900975; PMCID: PMC9333263.

Hect JL, Alattar AA, Harford EE, Reecher H, Fernandes DT, Esplin N, McDowell M, Abel TJ. Stereotactic laser interstitial thermal therapy for the treatment of pediatric drug-resistant epilepsy: indications, techniques, and safety. Childs Nerv Syst. 2022 May;38(5):961-970. doi: 10.1007/s00381-022-05491-x. Epub 2022 Mar 11. PMID: 35274185.

Hect JL, Fernandez LD, Welch WP, Abel TJ. Deep brain stimulation of the centromedian thalamic nucleus for the treatment of FIRES. Epilepsia Open. 2022 Mar;7(1):187-193. doi: 10.1002/epi4.12568. Epub 2021 Dec 13. PMID: 34862854; PMCID: PMC8886094.

Mallela AN, Hect JL, Abou-Al-Shaar H, Akwayena E, Abel TJ. Stereotactic laser interstitial thermal therapy corpus callosotomy for the treatment of pediatric drug-resistant epilepsy. Epilepsia Open. 2022 Mar;7(1):75-84. doi: 10.1002/epi4.12559. Epub 2021 Nov 24. PMID: 34758204; PMCID: PMC8886067.

Thomason ME, Hect JL, Waller R, Curtin P. Interactive relations between maternal prenatal stress, fetal brain connectivity, and gestational age at delivery. Neuropsychopharmacology. 2021 Sep;46(10):1839-1847. doi: 10.1038/s41386-021-01066-7. Epub 2021 Jun 29. PMID: 34188185; PMCID: PMC8357800.

Welch WP, Hect JL, Abel TJ. Case Report: Responsive Neurostimulation of the Centromedian Thalamic Nucleus for the Detection and Treatment of Seizures in Pediatric Primary Generalized Epilepsy. Front Neurol. 2021 Apr 28;12:656585. doi: 10.3389/fneur.2021.656585. PMID: 33995254; PMCID: PMC8113700.

Trainee Name: Bryan Hurtle, PhD
Trainee: Current
Faculty Member: Christopher J Donnelly, PhD
Publications:

Mann JR, Gleixner AM, Gomes E, DeChellis-Marks MR, Needham PG, Hurtle B, Portz B, Mauna JC, Calder CB, Copley KE, Wills ZP, Pandey UB, Brodsky JL, Thathiah A, Shorter J, Donnelly, CJ. RNA Binding Antagonizes Neurotoxic Phase Transitions of TDP-43. (2019) Neuron. 102:321-338.

Huang Y, Rafael Guimarães T, Todd N, Ferguson C, Weiss KM, Stauffer FR, McDermott B, Hurtle BT, Saito T, Saido TC, MacDonald ML, Homanics GE, Thathiah A. G protein-biased GPR3 signaling ameliorates amyloid pathology in a preclinical Alzheimer's disease mouse model. Proc Natl Acad Sci U S A. 2022 Oct 4;119(40):e2204828119. doi: 10.1073/pnas.2204828119. Epub 2022 Sep 26. PMID: 36161942; PMCID: PMC9546571.
 
Hurtle BT, Xie L, Donnelly CJ. Disrupting pathologic phase transitions in neurodegeneration. J Clin Invest. 2023 Jul 3;133(13):e168549. doi: 10.1172/JCI168549. PMID: 37395272; PMCID: PMC10313377.
 
Hurtle B, Donnelly CJ, Zhang X, Thathiah A. Live-cell visualization of tau aggregation in human neurons. Commun Biol. 2024 Sep 14;7(1):1143. doi: 10.1038/s42003-024-06840-z. PMID: 39277689; PMCID: PMC11401922.
 
Xie L, Merjane J, Bergmann CA, Xu J, Hurtle B, Donnelly CJ. CUTS RNA Biosensor for the Real-Time Detection of TDP-43 Loss-of-Function. bioRxiv [Preprint]. 2024 Jul 12:2024.07.12.603231. doi: 10.1101/2024.07.12.603231. PMID: 39026766; PMCID: PMC11257528.
Trainee Name: Deepa Issar
Trainee: Current
Faculty Member: Matthew Smith, PhD
Publications:

Johnston R, Snyder AC, Khanna SB, Issar D, Smith MA. The eyes reflect an internal cognitive state hidden in the population activity of cortical neurons. Cereb Cortex. 2022 Jul 21;32(15):3331-3346. doi: 10.1093/cercor/bhab418. PMID: 34963140; PMCID: PMC9340396.

Issar D, Williamson RC, Khanna SB, Smith MA. A neural network for online spike classification that improves decoding accuracy. J Neurophysiol. 2020 Apr 1;123(4):1472-1485. doi: 10.1152/jn.00641.2019. Epub 2020 Feb 26. PMID: 32101491; PMCID: PMC7191521.

Snyder AC, Issar D, Smith MA. What does scalp electroencephalogram coherence tell us about long-range cortical networks? Eur J Neurosci. 2018 Oct;48(7):2466-2481. doi: 10.1111/ejn.13840. Epub 2018 Feb 13. PMID: 29363843; PMCID: PMC6497452.

 

Trainee: Current
Faculty Member: Angela Gronenborn, PhD
Publications:
Xie Y, Clarke BP, Kim YJ, Ivey AL, Hill PS, Shi Y, Ren Y. Cryo-EM structure of the yeast TREX complex and coordination with the SR-like protein Gbp2. Elife. 2021 Mar 31;10:e65699. doi: 10.7554/eLife.65699. PMID: 33787496; PMCID: PMC8043747.
 
Sun D, Sang Z, Kim YJ, Xiang Y, Cohen T, Belford AK, Huet A, Conway JF, Sun J, Taylor DJ, Schneidman-Duhovny D, Zhang C, Huang W, Shi Y. Potent neutralizing nanobodies resist convergent circulating variants of SARS-CoV-2 by targeting diverse and conserved epitopes. Nat Commun. 2021 Aug 3;12(1):4676. doi: 10.1038/s41467-021-24963-3. PMID: 34344900; PMCID: PMC8333356.
 
Yong Joon Kim J, Sang Z, Xiang Y, Shen Z, Shi Y. Nanobodies: Robust miniprotein binders in biomedicine. Adv Drug Deliv Rev. 2023 Apr;195:114726. doi: 10.1016/j.addr.2023.114726. Epub 2023 Feb 7. PMID: 36754285.
 
Krzysiak TC, Choi YJ, Kim YJ, Yang Y, DeHaven C, Thompson L, Ponticelli R, Mermigos MM, Thomas L, Marquez A, Sipula I, Kemper JK, Jurczak M, Thomas G, Gronenborn AM. Inhibitory protein-protein interactions of the SIRT1 deacetylase are choreographed by post-translational modification. Protein Sci. 2024 Apr;33(4):e4938. doi: 10.1002/pro.4938. PMID: 38533551; PMCID: PMC10966392.